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icesSAG - Stock Assessment Graphs Database Web Services

R interface to access the web services of the ICES Stock Assessment Graphs database <https://sg.ices.dk>.

Last updated

7.51 score 14 stars 4 dependents 129 scripts 495 downloads

icesDatras - DATRAS Trawl Survey Database Web Services

R interface to access the web services of the ICES (International Council for the Exploration of the Sea) DATRAS trawl survey database <https://datras.ices.dk/WebServices/Webservices.aspx>.

Last updated

6.82 score 16 stars 172 scripts 516 downloads

icesTAF - Functions to Support the ICES Transparent Assessment Framework

Functions to support the ICES Transparent Assessment Framework <https://taf.ices.dk> to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.

Last updated

6.60 score 6 stars 1.5k scripts 509 downloads

icesVocab - ICES Vocabularies Database Web Services

R interface to access the Vocabularies REST API of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/>.

Last updated

6.01 score 7 stars 4 dependents 122 scripts 544 downloads

RDBEScore - Functions for the ICES Regional Database and Estimation System (RDBES)

The RDBEScore package provides functions to import and work with fisheries data downloaded from the ICES RDBES database. It also contains functions to perform estimation analysis using the resulting objects.

Last updated

5.69 score 2 stars 42 scripts

icesAdvice - Functions Related to ICES Advice

A collection of functions that facilitate computational steps related to advice for fisheries management, according to ICES guidelines. These include methods for calculating reference points and model diagnostics.

Last updated

5.44 score 7 stars 3 dependents 87 scripts 400 downloads

icesConnect - Provides User Tokens for Access to ICES Web Services

Provides user tokens for ICES web services that require authentication and authorization. Web services covered by this package are ICES VMS database, the ICES DATSU web services, and the ICES SharePoint site <https://www.ices.dk/data/tools/Pages/WebServices.aspx>.

Last updated

4.58 score 9 dependents 28 scripts 443 downloads

msy - Estimation of Equilibrium Reference Points for Fisheries

Methods to estimate equilibrium reference points for fisheries data. Currently data must be converted into FLStock objects of the FLR (Fisheries Library in R) style, defined in the R package FLCore.

Last updated

4.21 score 13 stars 62 scripts

icesDatsu - Functions to Interact with the ICES Data Submission Utility (DATSU)

Functions to Interact with the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.

Last updated

4.13 score 3 stars 3 dependents 4 scripts 501 downloads

icesSD - Stock Database Web Services

R interface to access the web services of the ICES Stock Database <https://sd.ices.dk>.

Last updated

3.76 score 1 stars 1 dependents 38 scripts 383 downloads

icesDatsuQC - Run Quality Checks on Data Prior to Submission to ICES

Run quality checks on data sets using the same checks that are conducted on the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk>.

Last updated

3.48 score 2 stars 1 dependents 406 downloads

icesRDBES - Tools for the ICES Regional DataBase and Estimation System

Tools to support the ICES Regional DataBase and Estimation System (RDBES) <https://sboxrdbesapi.ices.dk/rdbescatalogue/> to access, analyse, and process fisheries data collected under the EU Data Collection Framework.

Last updated

3.32 score 2 stars 13 scripts

icesVMS - Link to the ICES Vessel Monitoring System and Logbook Database Web Services

Links to the ICES Vessel Monitoring System (VMS) and logbook database web services <https://data.ices.dk/vms/webservices> to allow users to download summaries and data products.

Last updated

2.72 score 2 stars 53 scripts 36 downloads

icesUtils - Functions for processing ICES data and producing ICES shiny applications

A collection of functions useful for processing ICES data and making ICES shiny apps.

Last updated

2.70 score

gmrf - Lightweight helper for fitting GMRF models in mgcv

A set of functions to help with the fitting of gmrf models in mgcv. The package is intended for the fitting GMRF models such as random walks and seasonal effects. The code is written as simply as possible to make is easy to see how GMRFs are constructed.

Last updated

2.48 score 2 stars 1 dependents

icesSharePoint - Helper functions to interact with the ICES sharepoint

Helper functions to interact with the ICES sharepoint used by the International Council for the Exploration of the Sea (ICES).

Last updated

2.35 score 45 scripts

sfdSAR - Functions to calculate Swept area ratio and Surface and subsurface abrasion from VMS data

Functions to calculate Swept area ratio and Surface and subsurface abrasion from VMS data. The data is expected to conform to the ICES WGSFD data call format.

Last updated

2.35 score 3 stars 15 scripts

rc - Helper for Fitting GMRF Models on River Networks in MGCV

A set of functions to help with the fitting of gmrf models for river networks in mgcv. The package is intended for the fitting 1st and 2nd order smoothers on river networks. The code is written as simply as possible to make is easy to see how GMRFs are constructed.

Last updated

1.78 score 12 scripts

icesASD - Advice and Scenarios Database Web Services

R interface to access the web services of the ICES Advice and Scenarios database <https://asd.ices.dk/AdviceList>.

Last updated

1.70 score

rns - Functions to fit river network smoothers

Functions to fit river network smoothers, ...

Last updated

1.70 score

icesTAFDB - Transparent Assessment Framework (TAF) Database Web Services

R interface to access the web services of the ICES Transparent Assessment Framework (TAF) Database <http://taf.ices.dk>.

Last updated

1.70 score 3 scripts

loggercal - Estimation of Calibration Equations for Temperature Data Loggers

Contains all functions required to (1) Read in temperature logger calibration data (External and Internal) (2) calculate approximate calibration functions to convert raw temps to true and raw temps to SE of approx (3) output a file containing calibration results by logger for use as a bulk upload to FLEObs database.

Last updated

1.70 score 2 scripts

ef - Modelling Framework for the Estimation of Salmonid Abundance

A set of functions to estimate capture probabilities and densities from multipass pass removal data.

Last updated

cpp

1.00 score 10 scripts 309 downloads

rct3 - Predict Fish Year-Class Strength from Survey Data

Predict fish year-class strength by calibration regression analysis of multiple recruitment index series.

Last updated

1.00 score 1 scripts 324 downloads