icesTAF - Functions to Support the ICES Transparent Assessment Framework

Functions to support the ICES Transparent Assessment Framework <https://taf.ices.dk> to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.

Last updated 2 years ago

6.37 score 5 stars 1 dependents 1.1k scripts 494 downloads

icesSAG - Stock Assessment Graphs Database Web Services

R interface to access the web services of the ICES Stock Assessment Graphs database <https://sg.ices.dk>.

Last updated 5 months ago

6.24 score 11 stars 2 dependents 131 scripts 595 downloads

icesDatras - DATRAS Trawl Survey Database Web Services

R interface to access the web services of the ICES (International Council for the Exploration of the Sea) DATRAS trawl survey database <https://datras.ices.dk/WebServices/Webservices.aspx>.

Last updated 2 months ago

5.62 score 12 stars 115 scripts 228 downloads

icesVocab - ICES Vocabularies Database Web Services

R interface to access the Vocabularies REST API of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/>.

Last updated 2 months ago

5.55 score 6 stars 5 dependents 78 scripts 686 downloads

icesAdvice - Functions Related to ICES Advice

A collection of functions that facilitate computational steps related to advice for fisheries management, according to ICES guidelines. These include methods for calculating reference points and model diagnostics.

Last updated 1 years ago

5.14 score 7 stars 2 dependents 66 scripts 397 downloads

msy - Estimation of Equilibrium Reference Points for Fsisheries

Methods to estimate equilibrium reference points for fisheries data. Currently data must be converted into FLStock objects of the FLR (Fisheries Library in R) style, defined in the R package FLCore.

Last updated 2 years ago

3.91 score 13 stars 42 scripts

icesDatsu - Functions to Interact with the ICES Data Submission Utility (DATSU)

Functions to Interact with the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.

Last updated 5 months ago

3.78 score 2 stars 2 dependents 2 scripts 501 downloads

icesDatsuQC - Run Quality Checks on Data Prior to Submission to ICES

Run quality checks on data sets using the same checks that are conducted on the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk>.

Last updated 5 months ago

3.48 score 2 stars 1 dependents 464 downloads

icesSD - Stock Database Web Services

R interface to access the web services of the ICES Stock Database <https://sd.ices.dk>.

Last updated 5 months ago

3.16 score 1 stars 29 scripts 500 downloads

icesConnect - Provides User Tokens for Access to ICES Web Services

Provides user tokens for ICES web services that require authentication and authorization. Web services covered by this package are ICES VMS database, the ICES DATSU web services, and the ICES SharePoint site.

Last updated 3 years ago

2.78 score 10 dependents 20 scripts 213 downloads

icesVMS - Link to the ICES Vessel Monitoring System and Logbook Database Web Services

Links to the ICES Vessel Monitoring System (VMS) and logbook database web services <https://data.ices.dk/vms/webservices> to allow users to download summaries and data products.

Last updated 6 months ago

2.66 score 2 stars 46 scripts 44 downloads

gmrf - Lightweight helper for fitting GMRF models in mgcv

A set of functions to help with the fitting of gmrf models in mgcv. The package is intended for the fitting GMRF models such as random walks and seasonal effects. The code is written as simply as possible to make is easy to see how GMRFs are constructed.

Last updated 2 years ago

2.48 score 2 stars 1 dependents 7 scripts

icesSharePoint - Helper functions to interact with the ICES sharepoint

Helper functions to interact with the ICES sharepoint used by the International Council for the Exploration of the Sea (ICES).

Last updated 4 years ago

2.33 score 43 scripts

icesASD - Advice and Scenarios Database Web Services

R interface to access the web services of the ICES Advice and Scenarios database <https://asd.ices.dk/AdviceList>.

Last updated 12 months ago

1.70 score 5 scripts

rns - Functions to fit river network smoothers

Functions to fit river network smoothers, ...

Last updated 1 years ago

1.70 score 1 scripts

rc - Helper for Fitting GMRF Models on River Networks in MGCV

A set of functions to help with the fitting of gmrf models for river networks in mgcv. The package is intended for the fitting 1st and 2nd order smoothers on river networks. The code is written as simply as possible to make is easy to see how GMRFs are constructed.

Last updated 2 years ago

1.70 score 9 scripts

icesTAFDB - Transparent Assessment Framework (TAF) Database Web Services

R interface to access the web services of the ICES Transparent Assessment Framework (TAF) Database <http://taf.ices.dk>.

Last updated 2 years ago

1.70 score 3 scripts

loggercal - Estimation of Calibration Equations for Temperature Data Loggers

Contains all functions required to (1) Read in temperature logger calibration data (External and Internal) (2) calculate approximate calibration functions to convert raw temps to true and raw temps to SE of approx (3) output a file containing calibration results by logger for use as a bulk upload to FLEObs database.

Last updated 4 years ago

1.70 score 2 scripts

ef - Modelling Framework for the Estimation of Salmonid Abundance

A set of functions to estimate capture probabilities and densities from multipass pass removal data.

Last updated 4 years ago

cpp

1.00 score 9 scripts 139 downloads

rct3 - Predict Fish Year-Class Strength from Survey Data

Predict fish year-class strength by calibration regression analysis of multiple recruitment index series.

Last updated 5 years ago

1.00 score 1 scripts 430 downloads